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Hierarchical Condition Category (HCC) Coding

Healthcare providers today face a dual challenge: delivering exceptional patient care while navigating increasingly complex reimbursement models. A solution to this challenge is implementing Hierarchical Condition Category (HCC) coding software.

January 28, 2026 5 min read Stacey LaCotti
Hierarchical Condition Category (HCC) Coding

Healthcare providers today face a dual challenge: delivering exceptional patient care while navigating increasingly complex reimbursement models. A solution to this challenge is implementing Hierarchical Condition Category (HCC) coding software.

HCC coding doesn’t just affect claims. It directly shapes how much funding your organization receives to care for patients. Inaccurate coding can mean millions in lost revenue, compliance risks, and strained resources. Accurate coding, on the other hand, ensures fair reimbursement that reflects the true complexity of your patient population.

Here’s how HCC coding works, why accuracy matters, and how providers can close the coding gaps that could be costing them millions each year.

What Is HCC Coding?

Hierarchical Condition Category (HCC) coding is a risk adjustment model used by the Centers for Medicare & Medicaid Services (CMS). It uses diagnosis codes from the International Classification of Diseases (ICD) to group related conditions into categories that reflect the severity and cost of caring for patients.

Each category contributes to a patient’s risk adjustment factor (RAF), which is used to calculate their risk score. That score directly affects reimbursement rates for providers and health plans under Medicare Advantage (MA) and other value-based payment models.

For example, consider two Medicare beneficiaries:

  • A 72-year-old with chronic obstructive pulmonary disease (COPD), diabetes, and hypertension.

  • A 72-year-old with mild arthritis.

Even though they are the same age, the first patient receives a higher RAF score because their medical record reflects more complex health needs. The higher score leads to higher reimbursement, ensuring resources match the care required.

Why Is HCC Important?

Accurate HCC coding is essential because it determines whether providers receive the resources required to care for their patients. The risk adjustment payment model ensures that providers treating high-risk patients (such as those with comorbidities or severe acute conditions) are compensated fairly.

Undercoding means your patient population looks healthier than it actually is. This leads to lower RAF scores, reduced reimbursement rates, and underfunded care. Overcoding inflates risk scores, which can trigger audits from government agencies like CMS and lead to penalties for failing to meet medical necessity standards.

The stakes are high:

  • 20% of Medicare Advantage claims are miscoded

  • 40% of chronic conditions go unreported

  • 30% of hierarchical condition category codes fail CMS validation due to missing documentation

Inaccurate coding doesn’t just affect revenue. It also impacts quality and cost performance for healthcare organizations, potentially leading to lower quality outcomes and higher costs.

Benefits for Providers and Health Plans

When done correctly, HCC coding has a direct and measurable impact on financial performance, compliance, and patient care. Accurate coding not only protects revenue but also ensures that organizations receive fair reimbursement for the care they actually deliver.

Strengthen Value-Based Care Contracts

Chief Financial Officers (CFOs) need confidence that reimbursement matches the true health risk of their patient population. With accurate HCC coding, financial projections are more reliable, margins are more predictable, and contracts with health plans are based on data that reflects real patient needs.

Maximize Team Productivity

Traditional coding teams are stretched thin, often spending time on low-value encounters. With technology directing coders to the cases that matter most, leaders can achieve higher throughput, lower error rates, and better use of existing staff—without hiring additional resources.

Focus on Patient Care

Physicians want to treat patients, not navigate billing rules. Accurate HCC coding supported by automation reduces the need for doctors to over-document or correct coding errors, allowing them to devote more time to care while still ensuring compliant, detailed medical records.

Improve Financial Performance

A single coder using Aptarro's HCC Coding Engine can uncover at least $250,000 in RAF value per month. At scale, this means providers can:

Common Challenges in HCC Coding

Despite its importance, the HCC coding process is difficult for many healthcare organizations. Some of the most common challenges include:

  • Documentation gaps: Physicians focus on patient care, not billing codes. While notes may be clinically sound, they often lack the detail needed for accurate reimbursement.

  • Burden on HCC coders: Manual reviews require thousands of records to be checked. Coders waste time on low-value encounters that don’t impact risk adjustment scoring.

  • Evolving rules: Medicare and Medicaid Services frequently update coding requirements. Staying up to date is a full-time job.

  • Staffing shortages: Many healthcare providers don’t have enough coders to keep up with the workload.

  • Financial consequences: Missed codes reduce reimbursement, while inaccurate ones increase compliance risks with government agencies.

The result is lost revenue, underfunded care, and overworked teams.

Best Practices for Accurate HCC Coding

Improving coding accuracy requires a strategy. Here are some best practices followed by leading healthcare organizations:

  1. Stay current with CMS updates. The HCC model evolves, and rules change yearly.

  2. Ensure documentation supports every diagnosis code. Clinician notes should justify coding decisions clearly.

  3. Use analytics to monitor performance. Track missed opportunities and identify compliance risks.

  4. Leverage automation. Technology can uncover gaps, while coders focus on validation and compliance.

By combining strong documentation habits with technology, providers can reduce risks and improve value-based payment outcomes.

The Future of HCC Coding: Case Studies

Technology has transformed what’s possible in HCC coding. Aptarro’s HCC Coding Engine uses AI-driven automation to close gaps, improve coding accuracy, and support accurate HCC coding across patient populations.

AI-Powered Encounter Review

Every patient encounter is analyzed in real time. The system flags missing relevant diagnoses that could impact the patient’s risk score. This ensures compliance without overburdening physicians.

A multi-specialty group partnered with Aptarro to reduce manual HCC coding review from three full-time employees across 12 sites to just two employees covering 53 sites.

Priority Encounter Review

Not every case carries the same weight. Aptarro prioritizes high-value encounters that drive accurate risk score calculation and risk adjustment factor RAF improvement. Take Center for Primary Care, a network that uncovered $6 million in additional revenue in the first year...without hiring more coders.

Seamless Workflow Integration

The platform integrates into existing EMR workflows, ensuring minimal disruption. ROI is achieved within weeks, not months. For example, the long-standing South Bend Clinic increased RAF scores by 34% and captured $504,220 in revenue in two months.

With these capabilities, Aptarro helps providers and health plans achieve precise HCC coding, improve resource allocation, and reduce the risk of lower quality outcomes.

Aptarro HCC Engine for Accurate Risk Adjustment

Accurate HCC coding is essential for financial stability, compliance, and high-quality patient care. But providers don’t have to solve this alone.

With Aptarro’s HCC Coding Engine, you can:

  • Align RAF scores with actual patient complexity.

  • Increase coder productivity by up to 300%.

  • Reduce compliance risks with AI-driven accuracy.

  • Uncover millions in missed revenue opportunities.

Providers can focus on patient care, while Aptarro’s automation ensures accurate reimbursement and compliance with Medicare and Medicaid Services CMS requirements.

See how Aptarro can help your organization capture revenue.

Request a demo today.